CORDIS Project
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This project explores algorithmic challenges related to jumbled strings, which are strings that can be rearranged to match each other. It aims to develop efficient algorithms and data structures for searching and analyzing these strings, with significant applications in bioinformatics, particularly in mass spectrometry…
We propose to investigate a number of algorithmic problems on jumbled strings, where we refer to a string t as a jumbled version of string s if t's positions can be permuted such that it is transformed into s.
In other words, the two strings have the same Parikh vector, where the Parikh vector counts the number of occurrences of each character.
For example, the strings AAGACGT and AAACGGT both have Parikh vector (3,1,2,1).
All strings with the same Parikh vector build an equivalence class, which…
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